slinxj: I'm not sure this is a complete solution, but in the .ini file, you can specify a different corner. For example, if you want it to go into the upper right corner, change the location setting to 'ne' (northeast). If this still does not work well, a change might be needed in Flit to (optionally) not force its location someplace specifically, so it's parent can better determine where it goes. But this might be deferred to a future release.
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Mike L.