Startup scripts executed before backuped data restored. This means, that for example WICD auto connection script do not see saved settings and it has to be added to bootlocal.sh Changing the order to
1) load extensions
2) restore backup
3) run startup scripts
would solve the problem and would eliminate extra configuration step. There may be an impact on certain extensions theoretically, but I do not have a real case. Also making restored data available earlier would narrow the gap between different installation types.