I think that some programs are included in the menu and wbar unnecessarily, and should be removed. Documentation should explain how to use them.
Examples
Cups
I suggest cups be removed from the menu and wbar.
Documentation should explain that /usr/local/bin/cups_start.sh needs to be added to bootlocal.sh.
Iptables
I suggest Iptables be removed from the menu.
Documentation should explain that sudo /usr/local/sbin/basic-firewall needs to be added to bootlocal.sh, for those who want to use the basic firewall.