On the "Remaster Step #2" screen, click the blue link for the "initrd filesystem Directory". This will open a terminal. Make a note of the directory it put you in (will be something like /tmp/ezremaster/extract). Type "sudo su", and then "cd" back to the temp initrd directory (i.e. cd /tmp/ezremaster/extract). From here you can do something like "cp -rp /home ." to copy your /home directory in to your temp initrd directory. This directory will end up being the root filesystem for your remaster, so you can make any changes you want or copy any other files in to it.
Once you have customized this kind of stuff, go back to the ezremaster window and click "Create ISO"
Let me know if you have any questions about this.
take care,
Brian