Thanks for the push in the right direction, guys! I did a reinstall to USB, but this time with some boot codes added (like cron, etc.) I added "quiet", but for some reason it doesn't seem to be working.
The trouble I'm having now, is if I understand this, once you start using "Backup," your files should be automatically saved and restored upon a reboot, correct? That seems to be the case as I've changed the wallpaper, and it comes up just fine after a reboot, but for some reason all of my cron jobs are erased. I "sudo crontab -e" to edit the job, save it, make sure it's running, then I reboot and the cron job is gone. Anybody know what is happening?